PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G109400.1
Common NameB456_007G109400, LOC105802808
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 189aa    MW: 20994.3 Da    PI: 6.3527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G109400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-173685255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Gorai.007G109400.1 36 VYRGIRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAFCLRG 85
                        69****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-373699IPR001471AP2/ERF domain
PfamPF008471.8E-113685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-303694IPR001471AP2/ERF domain
PROSITE profilePS5103223.5913693IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-213695IPR016177DNA-binding domain
CDDcd000183.21E-303794No hitNo description
PRINTSPR003672.4E-133748IPR001471AP2/ERF domain
PRINTSPR003672.4E-137595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQTSYTEDD LNSSSTTTSE THQKHISKRG STRHAVYRGI RKRRWGKWVS EIREPRKKSR  60
IWLGSFPAPE MAAKAYDVAA FCLRGSKALL NFPDEVEDLP RPSTCTARDI QAAAAKAAYS  120
VVSWNKSGVS AEEGNGHSGD DFWGEIELPE LLNSGCSEWN SCGWTFAADS AWLEGEAQQQ  180
QHYFLACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-183796666ATERF1
3gcc_A6e-183796666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490130.11e-140PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-59ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0D2SBB81e-139A0A0D2SBB8_G
STRINGPOPTR_0014s09540.14e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.16e-60ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]